13.2 QC and Galaxy Workflows
13.2.1 Introduction
In the “A short introduction to Galaxy” activity you learned how to upload a file, use a tool, view results, view histories, extract and run a workflow, and share a history. You will now practice using these skills to do one of the first things when encountering a new sequencing dataset – quality control (QC). After assessing the quality of both short and long reads, gain more practice with workflows by creating and editing a new workflow.
13.2.2 Activity 1 – Quality Control (QC)
Estimated time: 90 min
13.2.2.1 Instructions
- Complete the “Quality Control” hands-on tutorial: training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial
- NOTE: Do all hands-on steps in a single Galaxy history
13.2.3 Activity 2 – Creating, Editing and Importing Galaxy Workflows
Estimated time: 30 min
13.2.3.1 Instructions
- Complete the “Creating, Editing and Importing Galaxy Workflows” hands-on tutorial: training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/workflow-editor/tutorial